If you’re someone who loves the ultimate indulgence, wait until you try this Brownie Stuffed Cookie Dough Cupcakes Recipe. Imagine the rich, fudgy delight of a classic brownie bottom topped with the buttery, sweet, and chewy charm of homemade cookie dough baked into a cupcake — it’s the perfect mashup dessert that satisfies every chocolate craving in one bite. This recipe brings together two of the world’s most beloved sweets in a fun and creative way that’s sure to wow your friends and family, whether for a special celebration or a cozy night in.

Ingredients You’ll Need
These ingredients are wonderfully simple yet essential because each one plays a key role in creating the rich flavors and perfect textures you expect from a decadent dessert mashup like this. From the fudgy brownie base to the soft, gooey cookie dough topping, you’ll see how these staples combine beautifully.
- 1 box brownie mix (plus eggs, oil, and water): The foundation of our luscious brownie bottom — you can trust your favorite brand or go homemade for extra flair.
- 1 cup unsalted butter (softened): Adds richness and tenderness to the cookie dough, ensuring the texture is just right.
- 1 cup brown sugar: Brings a deep caramel sweetness to the cookie dough for that classic flavor.
- ½ cup granulated sugar: Balances sweetness and helps give the cookie dough a light texture.
- 2 large eggs: Provide structure and moisture for perfect cookie dough consistency.
- 2 teaspoons vanilla extract: Enhances the overall flavor with warm, inviting notes.
- 2½ cups all-purpose flour: The base that forms the cookie dough’s structure, making it sturdy yet soft.
- 1 teaspoon baking soda: Helps the cookie dough rise and gives a lighter texture.
- ½ teaspoon salt: Balances sweetness and enhances flavor depth.
- 1½ cups mini chocolate chips: Little pockets of melty chocolate throughout the cookie dough.
- ½ cup sweetened condensed milk: Adds moisture and an irresistible sweetness, keeping the cookie dough luscious.
- ½ cup heavy cream: Used for optional ganache topping to add a silky finish.
- 1 cup chocolate chips (for topping, optional): The perfect ingredient to create a rich chocolate ganache that crowns the cupcakes stunningly.
How to Make Brownie Stuffed Cookie Dough Cupcakes Recipe
Step 1: Prepare the Brownie Base
Start by making the brownie batter according to the instructions on your box mix. Preheat your oven to 350°F (175°C) and line a cupcake pan with paper liners for easy cleanup. Spoon about a tablespoon of brownie batter into each cupcake liner, creating that fudgy base layer that will hold all the magic. Bake just for 10 minutes until set but not fully baked through—this step ensures a perfectly gooey center inside later.
Step 2: Whip Up the Cookie Dough
While the brownie bases bake, it’s time to get your hands on the cookie dough. In a large bowl, cream the softened butter together with brown sugar and granulated sugar until it turns light and fluffy—this is where your cookie dough starts to come alive. Beat in the eggs and vanilla extract thoroughly before moving on. In another bowl, sift together the flour, baking soda, and salt, then slowly mix this dry combo into your wet ingredients. Finally, fold in the mini chocolate chips and sweetened condensed milk. This sticky, sweet dough is going to perfectly balance out the rich brownie below.
Step 3: Combine and Bake
Once your brownie bottoms have cooled slightly but are still warm, top each one with about two tablespoons of your luscious cookie dough. Gently press the dough down so it adheres nicely. Put the cupcakes back in the oven and bake for another 12 to 14 minutes until the cookie dough topping is golden and set. As the aroma fills your kitchen, you’ll know you’re close to the ultimate treat!
Step 4: Optional Chocolate Ganache Topping
For an extra layer of decadence, melt chocolate chips with heavy cream to create a silky ganache. Drizzle this luxurious topping over your cooled cupcakes. This step is entirely optional but highly recommended if you want to elevate your Brownie Stuffed Cookie Dough Cupcakes Recipe to show-stopping dessert status.
How to Serve Brownie Stuffed Cookie Dough Cupcakes Recipe

Garnishes
These cupcakes are beautiful on their own, but a little garnish can make them look bakery-worthy. Consider a sprinkle of flaky sea salt on top of the ganache to contrast the sweetness or a dusting of powdered sugar for a snowy effect. For a playful touch, mini chocolate chips or a drizzle of caramel sauce works perfectly to highlight the rich layers inside.
Side Dishes
When serving these cupcakes, pairing them with a scoop of vanilla ice cream or a simple dollop of whipped cream can add wonderfully creamy contrast. Hot coffee or a cold glass of milk can perfectly complement the chocolate and buttery flavors, making the eating experience even more satisfying.
Creative Ways to Present
To really wow at a party, serve the cupcakes on a tiered cake stand with fresh berries or mint leaves for bursts of color and brightness. You can also place each cupcake in a cute mini muffin liner for bite-sized treats at gatherings. If presenting as gifts, stack them in a decorative box with parchment paper for a charming homemade touch.
Make Ahead and Storage
Storing Leftovers
Leftover Brownie Stuffed Cookie Dough Cupcakes Recipe treats are best stored in an airtight container at room temperature for up to two days. Keeping them at room temperature preserves the cookie dough’s soft texture and the brownies’ fudginess perfectly.
Freezing
If you want to make these ahead for a special occasion, these cupcakes freeze beautifully. Wrap each cupcake individually in plastic wrap, then place them in a freezer-safe container or zip-top bag. They can be frozen for up to three months without losing their delicious taste or texture.
Reheating
To enjoy your cupcakes warm and gooey again, simply thaw them overnight in the fridge and then heat in the microwave for about 20 seconds. This brings back that just-baked magic, especially if you love the gooier center.
FAQs
Can I use homemade brownie batter for the Brownie Stuffed Cookie Dough Cupcakes Recipe?
Absolutely! Homemade brownie batter works wonderfully and allows you to customize the flavor and texture to your liking. Just spoon the batter into the cupcake liners the same way as with store-bought mixes.
Is the cookie dough safe to eat since it contains flour and eggs?
This recipe bakes the cookie dough topping fully, making it safe to eat. If you want to add raw cookie dough as a topping without baking, use heat-treated flour and pasteurized eggs to avoid any health risks.
Can I make these cupcakes gluten-free?
You can substitute the all-purpose flour in the cookie dough with a gluten-free flour blend that measures like regular flour. Be sure to use a gluten-free brownie mix or homemade gluten-free brownie batter to keep the dessert completely gluten-free.
Do I have to add the ganache topping? What if I skip it?
The ganache is optional and adds extra richness and shine to your cupcakes. Skipping it won’t affect the core flavors or textures — the brownie and cookie dough combo is already incredible on its own.
How long do these cupcakes take to bake in total?
In total, you’ll spend about 24 minutes baking—10 minutes for the brownie base and another 12 to 14 minutes after adding the cookie dough topping. Including prep time, expect under an hour to enjoy these delightful treats.
Final Thoughts
You absolutely have to try this Brownie Stuffed Cookie Dough Cupcakes Recipe if you love desserts that combine comforting classics with a twist. It’s a wonderfully fun recipe that turns your favorite sweets into a magical mashup perfect for sharing or treating yourself. Once you taste the fudgy brownie paired with buttery cookie dough, you’ll wonder why someone didn’t invent this sooner.
Print
Brownie Stuffed Cookie Dough Cupcakes Recipe
- Prep Time: 25 minutes
- Cook Time: 24 minutes
- Total Time: 49 minutes
- Yield: 12 cupcakes
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
These Brownie Stuffed Cookie Dough Cupcakes combine the rich fudginess of brownies with the soft, chewy texture of cookie dough, all baked into a delightful cupcake form. Each cupcake features a warm brownie base topped with a luscious cookie dough layer, optionally finished with a glossy chocolate ganache for an extra indulgent treat perfect for dessert lovers.
Ingredients
Brownie Base
- 1 box brownie mix (plus ingredients listed on the box, typically eggs, oil, and water)
Cookie Dough Topping
- 1 cup unsalted butter (softened)
- 1 cup brown sugar
- ½ cup granulated sugar
- 2 large eggs
- 2 teaspoons vanilla extract
- 2½ cups all-purpose flour
- 1 teaspoon baking soda
- ½ teaspoon salt
- 1½ cups mini chocolate chips
- ½ cup sweetened condensed milk
Optional Topping
- ½ cup heavy cream
- 1 cup chocolate chips
Instructions
- Prepare Brownie Batter: Follow the instructions on the brownie mix box to prepare the batter, usually involving combining the mix with eggs, oil, and water.
- Preheat and Line Pan: Preheat your oven to 350°F (175°C) and line a cupcake pan with paper liners to prepare for baking.
- Partially Bake Brownie Bases: Spoon about 1 tablespoon of prepared brownie batter into the bottom of each cupcake liner. Bake in the preheated oven for 10 minutes, then remove and allow to cool slightly.
- Cream Butter and Sugars: While the brownie bases bake, use a large bowl to cream together softened butter, brown sugar, and granulated sugar until the mixture is light and fluffy.
- Add Eggs and Vanilla: Beat in the eggs and vanilla extract into the creamed butter and sugar mixture until fully combined and smooth.
- Combine Dry Ingredients: In a separate bowl, whisk together all-purpose flour, baking soda, and salt to prepare the dry mix.
- Mix Dry Ingredients into Wet: Gradually add the dry ingredients into the wet mixture, stirring to create a thick cookie dough.
- Incorporate Chocolate Chips and Condensed Milk: Fold mini chocolate chips and sweetened condensed milk into the cookie dough batter to enrich texture and flavor.
- Assemble Cupcakes: Once the brownie bottoms have cooled slightly, scoop about 2 tablespoons of cookie dough dough on top of each brownie base in the cupcake liners, gently pressing down to evenly layer.
- Final Baking: Return the cupcake pan to the oven and bake the assembled cupcakes for another 12 to 14 minutes, or until the cookie dough tops turn golden brown.
- Cool Completely: Allow the cupcakes to cool thoroughly in the pan before removing to ensure they hold their shape.
- Optional Ganache Drizzle: For a decadent finish, melt the chocolate chips with heavy cream to form a ganache and drizzle over the cooled cupcakes.
Notes
- You can use homemade brownie batter as an alternative to box mix if preferred.
- For a firmer texture, chill the cupcakes before serving.
- Serve warm for gooey, melty centers for an indulgent experience.

